本地InterProScan报错:
/lib64/libm.so.6: version `GLIBC_2.27' not found (required by bin/prosite/pfscanV3)
/lib64/libm.so.6: version `GLIBC_2.27' not found (required by bin/prosite/pfsearchV3)
遇到的问题:学校服务器无root权限升级GLIBC
查看现有glibc版本,无GLIBC_2.27
strings /lib64/libc.so.6|grep GLIBC| head -22
image.png
解决:
查看服务器linux版本
lsb_release -a
image.png
替换pfscanV3/pfsearchV3文件
vim interproscan.properties
#在# Binary file locations (required for setup.py)下加两句话,ubuntu同理
binary.prosite.pfscanv3.path=${bin.directory}/prosite/centos7.9/pfscanV3
binary.prosite.pfsearchv3.path=${bin.directory}/prosite/centos7.9/pfsearchV3
image.png
保存退出再运行就不出错啦~~
参考:https://interproscan-docs.readthedocs.io/en/latest/KnownIssues.html