下载最新版本的Anaconda
安装Anaconda
bash Anaconda3-2019.10-Linux-x86_64.sh -b -f -p ~/conda
配置路径
echo 'export PATH="~/anaconda3/bin:$PATH"'>>~/.bashrc
source ~/.bashrc
启动conda
cd conda/bin/
. ./activate
conda deactivate
添加镜像
55 conda config --add channels conda-forge # Lowest priority
56 conda config --add channels r # Optional
57 conda config --add channels defaults
58 conda config --add channels bioconda
59 conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
60 conda config --set show_channel_urls yes
安装R和Python
61 conda create -y -n transcriptome r-base=3.4.3 python=2.7
安装必要的生信分析软件
62 conda install -y -q samtools multiqc rseqc fastqc salmon star stringtie