eggnog
下载
cd ~/software
wget https://github.com/jhcepas/eggnog-mapper/archive/1.0.3.tar.gz
tar xvzf 1.0.3.tar.gz
cd eggnog-mapper-1.0.3
下载数据库
cd eggnog-mapper
./download_eggnog_data.py euk bact arch viruses
测试使用
python emapper.py -i test/polb.fa --output polb_bact -d bact --data_dir ~/data/eggnog.db
结果
polb_bact.emapper.annotations
polb_bact.emapper.hmm_hits
polb_bact.emapper.seed_orthologs
使用
python /mnt/raid5/wangteng/Software/eggNOG-mapper/eggnog-mapper/emapper.py
-i /mnt/raid6/duanyiqian/buffalo_gut/cdhit/db90
--output result_eggnog -d bact
--data_dir /mnt/raid5/wangteng/Software/eggNOG-mapper/eggnog-mapper/databases
