Projects
- RMAnno web server (1-6): a web server for annotating RNA modification sites;
- TCGA, clinical relevance and biomarker analysis: collaborate with hospitals;
- mRNA-m5U prediction (7): same as before for more papers;
Reference
- Ji, X., Li, W., Song, J., Wei, L. and Liu, X.S. (2006) CEAS: cis-regulatory element annotation system. Nucleic Acids Res, 34, W551-554.
- Shin, H., Liu, T., Manrai, A.K. and Liu, X.S. (2009) CEAS: cis-regulatory element annotation system. Bioinformatics, 25, 2605-2606.
- Zhu, L.J., Gazin, C., Lawson, N.D., Pagès, H., Lin, S.M., Lapointe, D.S. and Green, M.R. (2010) ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data. BMC bioinformatics, 11, 1.
- Tan, G. and Lenhard, B. (2016) TFBSTools: an R/bioconductor package for transcription factor binding site analysis. Bioinformatics, btw024.
- Uyar, B., Yusuf, D., Wurmus, R., Rajewsky, N., Ohler, U. and Akalin, A. (2017) RCAS: an RNA centric annotation system for transcriptome-wide regions of interest. Nucleic Acids Research.
- Liu, Q. and Gregory, R.I. (2019) RNAmod: an integrated system for the annotation of mRNA modifications. Nucleic Acids Research.
- Liu, L., Lei, X., Fang, Z., Tang, Y., Meng, J. and Wei, Z. (2020) LITHOPHONE: Improving lncRNA Methylation Site Prediction Using an Ensemble Predictor. Frontiers in Genetics, 11.
