免疫生物信息学数据库汇总||Immunoinformatics Databases

通过信息技术的进步而产生的大量生物技术数据,正在促进生物系统知识的扩大。 这些创新改变了生物医学研究、开发和应用的方式。 临床数据补充了生物数据,能够详细描述各种他 健康和疾病的状态,进展和对治疗的反应。 表示各种生物状态、过程及其时间依赖性的数据量使得能够研究生物系统 EMS在不同层次的组织,从分子到有机体,甚至在种群水平。 多种数据来源支持迅速增长的生物医学知识;然而,我们分析和解释这些数据的能力远远落后于数据的生成和存储能力。

近年来,数据库资源已成为免疫学研究的一个基本工具,这是由于先进的生物技术产生了大量生物数据。 在免疫学研究中获取现有信息、规划实验和分析实验的途径越来越广泛 结果。 免疫学数据包括生物序列,抗原和表位结构,免疫遗传学性质和免疫相互作用的特异性.免疫数据库包括生物信息资源,其中免疫数据被存储,计算方法适合于信息数据的提取和分析。

A summary list of the best-known and recent databases relevant in immunology research

Databases Description References
AAgAtlas http://aagatlas.ncpsb.org Human autoantigen database Wang et al. (2017)
ALPSbase http://www.niaid.nih.gov/topics/alps/Pages/default.asp Autoimmune lymphoproliferative syndrome database Puck (2005)
AntigenDB http://www.imtech.res.in/raghava/antigend Sequence, structure and other data on pathogen antigens Ansari et al. (2010)
AntiJen http://www.ddg-pharmfac.net/antijen/AntiJen/antijenhomepage.htm Quantitative binding data for peptides and proteins of immunological interest Toseland et al. (2005)
BCIpep http://www.imtech.res.in/raghava/bcipep/ Database of experimentally determined B-cell epitopes of antigenic proteins Saha et al. (2005)
bNAber http://bnaber.org/ A database of broadly neutralizing HIV 1 antibodies Eroshkin et al. (2014)
dbMHC http://www.ncbi.nlm.nih.gov/gv/mhc/ dbMHC provides access to HLA sequences, tools to support genetic testing of HLA loci, HLA allele and haplotype frequencies of over 90 populations worldwide Helmberg et al. (2004)
DIGIT http://circe.med.uniroma1.it/digit Database of immunoglobulin variable domain sequences annotated with the type of antigen, the germline sequences and pairing information between light and heavy chains Chailyan et al. (2012)
EPIMHC http://imed.med.ucm.es/epimhc/ A curated database of MHC-binding peptides for customized computational vaccinology Reche et al. (2005)
Epitome http://rostlab.org/services/epitome/ Database of all known antigenic residues and the antibodies that interact with them Schlessinger et al. (2006)
GPX-Macrophage Expression Atlas http://gpxmea.gti.ed.ac.uk/ An online resource for expression based studies of a range of macrophage cell types following treatment with pathogens and immune modulators Grimes et al. (2005)
HaptenDB http://www.imtech.res.in/raghava/haptendb Database of hapten molecules, small molecule not immunogenic by itself, that can react with antibodies of appropriate specificity Singh et al. (2006)
HPTAA http://www.bioinfo.org.cn/hptaa/ Database of potential tumor-associated antigens that uses expression data from various expression platforms, including carefully chosen publicly available microarray expression data, GEO SAGE data and Unigene expression data Wang et al. (2006)
IEDB http://www.iedb.org/ The Immune Epitope Database (IEDB) provides a catalog of experimentally characterised B and T cell epitopes, as well as data on MHC binding and MHC ligand elution experiments Vita et al. (2015)
EDB 3D http://www.immuneepitope.org/bb_structure.php Structural data within the Immune Epitope Database Ponomarenko et al. (2011)
IL2Rgbase http://research.nhgri.nih.gov/scid/ X-linked severe combined immunodeficiency mutations Puck (1996)
IMGT http://www.imgt.org/ The international ImMunoGeneTics information system (iMGT) is a high-quality integrated knowledge resource specialized in IG, T cell receptors and MHC of human and other vertebrate species and related proteins of the immune system (RPI) Lefranc et al. (2005)
IMGT/GENE-DB http://www.imgt.org/IMGT_GENE-DB/GENElect?livret=0/ IMGT/GENE-DB is part of IMGT database and allows a search of IG and TR gene entries by locus, group, subgroup, based on the classification axiom of IMGT-ONTOLOGY Giudicelli and Lefranc (1999)
IMGT/HLA http://www.ebi.ac.uk/imgt/hla/ Database of recognized HLA alleles and their sequences for performing sequence alignments Robinson et al. (2000)
IMGT/LIGM-DB http://www.imgt.org/ligmdb/ IMGT/LIGM-DB is a database of immunoglobulin and T cell receptor nucleotide sequences Giudicelli et al. (2006)
IMGT/mAb-DB http://www.imgt.org Database for therapeutic monoclonal antibodies Lefranc et al. (2015)
ImmuNet http://immunet.princeton.edu Database of immunological networks and functional relationships between molecular entities, able to predict disease-associated genes Gorenshteyn et al. (2015)
InnateDB http://www.innatedb.com/ Database of genes, proteins, experimentally-verified interactions and signalling pathways involved in the innate immune response of humans, mice and bovines to microbial infection Lynn et al. (2008)
Interferon Stimulated Gene Database http://www.lerner.ccf.org/labs/williams/xchip-html.cgi A database of interferon stimulated genes (ISGs) Samarajiwa et al. (2009)
IPD - Immuno Polymorphism Database http://www.ebi.ac.uk/ipd/ Databases of polymorphic genes in the immune system Robinson et al. (2003)
IPD-ESTDAB http://www.ebi.ac.uk/ipd/estdab/ IPD-ESTDAB is a database of immunologically characterised melanoma cell lines Robinson et al. (2003)
IPD-HPA - Human Platelet Antigens http://www.ebi.ac.uk/ipd/hpa/ IPD-HPA is a database of alloantigens expressed only on platelets Robinson et al. (2003)
IPD-KIR - Killer-cell Immunoglobulin-like Receptors http://www.ebi.ac.uk/ipd/kir/ IPD-KIR contains the allelic sequences of Killer-cell Immunoglobulin-like Receptors Robinson et al. (2003)
IPD-MHC http://www.ebi.ac.uk/ipd/mhc/ IPD-MHC is a database of sequences of the major histocompatibility complex of different species Robinson et al. (2003)
MHCBN http://www.imtech.res.in/raghava/mhcbn/ MHCBN is a comprehensive database comprising over 23000 peptids sequences, whose binding affinity with MHC or TAP molecules has been assayed experimentally. Bhasin et al. (2003)
MPID-T2 http://biolinfo.org/mpid-t2/ MPID-T2 is a highly curated database for sequence-structurefunction information on MHC-peptide interactions Kangueane et al. (2001)
MUGEN Mouse Database http://www.mugennoe.org/database/ Murine models of immune processes and immunological diseases Aidinis et al. (2008)
Protegen http://www.violinet.org/protegen/ Protective antigen database and analysis system Yang et al. (2011)
SAbDab http://opig.stats.ox.ac.uk/webapps/sabdab Structural Antibody Database Dunbar et al. (2014)
SYFPEITHI http://www.syfpeithi.de/ A database of MHC ligands and motifs Rammensee et al. (1995)
SuperHapten http://bioinformatics.charite.de/superhapten/ Database integrating information from literature and web resources about haptens Günther et al. (2007)
VBASE2 http://www.vbase2.org/ Database of germ-line V genes from the immunoglobulin loci of human and mouse Retter et al. (2005)
©著作权归作者所有,转载或内容合作请联系作者
  • 序言:七十年代末,一起剥皮案震惊了整个滨河市,随后出现的几起案子,更是在滨河造成了极大的恐慌,老刑警刘岩,带你破解...
    沈念sama阅读 203,456评论 5 477
  • 序言:滨河连续发生了三起死亡事件,死亡现场离奇诡异,居然都是意外死亡,警方通过查阅死者的电脑和手机,发现死者居然都...
    沈念sama阅读 85,370评论 2 381
  • 文/潘晓璐 我一进店门,熙熙楼的掌柜王于贵愁眉苦脸地迎上来,“玉大人,你说我怎么就摊上这事。” “怎么了?”我有些...
    开封第一讲书人阅读 150,337评论 0 337
  • 文/不坏的土叔 我叫张陵,是天一观的道长。 经常有香客问我,道长,这世上最难降的妖魔是什么? 我笑而不...
    开封第一讲书人阅读 54,583评论 1 273
  • 正文 为了忘掉前任,我火速办了婚礼,结果婚礼上,老公的妹妹穿的比我还像新娘。我一直安慰自己,他们只是感情好,可当我...
    茶点故事阅读 63,596评论 5 365
  • 文/花漫 我一把揭开白布。 她就那样静静地躺着,像睡着了一般。 火红的嫁衣衬着肌肤如雪。 梳的纹丝不乱的头发上,一...
    开封第一讲书人阅读 48,572评论 1 281
  • 那天,我揣着相机与录音,去河边找鬼。 笑死,一个胖子当着我的面吹牛,可吹牛的内容都是我干的。 我是一名探鬼主播,决...
    沈念sama阅读 37,936评论 3 395
  • 文/苍兰香墨 我猛地睁开眼,长吁一口气:“原来是场噩梦啊……” “哼!你这毒妇竟也来了?” 一声冷哼从身侧响起,我...
    开封第一讲书人阅读 36,595评论 0 258
  • 序言:老挝万荣一对情侣失踪,失踪者是张志新(化名)和其女友刘颖,没想到半个月后,有当地人在树林里发现了一具尸体,经...
    沈念sama阅读 40,850评论 1 297
  • 正文 独居荒郊野岭守林人离奇死亡,尸身上长有42处带血的脓包…… 初始之章·张勋 以下内容为张勋视角 年9月15日...
    茶点故事阅读 35,601评论 2 321
  • 正文 我和宋清朗相恋三年,在试婚纱的时候发现自己被绿了。 大学时的朋友给我发了我未婚夫和他白月光在一起吃饭的照片。...
    茶点故事阅读 37,685评论 1 329
  • 序言:一个原本活蹦乱跳的男人离奇死亡,死状恐怖,灵堂内的尸体忽然破棺而出,到底是诈尸还是另有隐情,我是刑警宁泽,带...
    沈念sama阅读 33,371评论 4 318
  • 正文 年R本政府宣布,位于F岛的核电站,受9级特大地震影响,放射性物质发生泄漏。R本人自食恶果不足惜,却给世界环境...
    茶点故事阅读 38,951评论 3 307
  • 文/蒙蒙 一、第九天 我趴在偏房一处隐蔽的房顶上张望。 院中可真热闹,春花似锦、人声如沸。这庄子的主人今日做“春日...
    开封第一讲书人阅读 29,934评论 0 19
  • 文/苍兰香墨 我抬头看了看天上的太阳。三九已至,却和暖如春,着一层夹袄步出监牢的瞬间,已是汗流浃背。 一阵脚步声响...
    开封第一讲书人阅读 31,167评论 1 259
  • 我被黑心中介骗来泰国打工, 没想到刚下飞机就差点儿被人妖公主榨干…… 1. 我叫王不留,地道东北人。 一个月前我还...
    沈念sama阅读 43,636评论 2 349
  • 正文 我出身青楼,却偏偏与公主长得像,于是被迫代替她去往敌国和亲。 传闻我的和亲对象是个残疾皇子,可洞房花烛夜当晚...
    茶点故事阅读 42,411评论 2 342