1.
IM_0025 output_bvals output_bvecs output_info.txt output.nii
fslroi output b0 0 1
b0.nii.gzIM_0025 output_bvals output_bvecs output_info.txt output.nii
2.
bet2 b0.nii.gz nodif_brain -m -f 0.2
nodif_brain.nii.gz nodif_brain_mask.nii.gz b0.nii.gz IM_0025 output_bvals output_bvecs output_info.txt output.nii
3.
eddy_correct output data 0
b0.nii.gz data.nii.gznodif_brain_mask.nii.gz output_bvals output_info.txt
data.ecclog IM_0025 nodif_brain.nii.gz output_bvecs output.nii
4.
dtifit --data=data.nii.gz --out=data --mask=nodif_brain_mask.nii.gz --bvecs=output_bvecs --bvals=output_bvals
b0.nii.gz data_L2.nii.gz data.nii.gz data_V3.nii.gzoutput_bvals
data.ecclog data_L3.nii.gz data_S0.nii.gz IM_0025 output_bvecs
data_FA.nii.gz data_MD.nii.gz data_V1.nii.gznodif_brain_mask.nii.gz output_info.txt
data_L1.nii.gz data_MO.nii.gz data_V2.nii.gz nodif_brain.nii.gz output.nii
