linux 软件安装

下载conda wget+网址链接

bio04@VM-0-10-ubuntu:~/biosoft$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

安装 install+xxx.sh
激活 安装的程序 source ~/.bashrc

bio04@VM-0-10-ubuntu:~/biosoft$ source ~/.bashrc

添加镜像，加快conda内软件下载

(base) bio04@VM-0-10-ubuntu:~/biosoft$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
bioconda
conda config --set show_channel_urls yes(base) bio04@VM-0-10-ubuntuhttps://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
(base) bio04@VM-0-10-ubuntu:~/biosoft$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
(base) bio04@VM-0-10-ubuntu:~/biosoft$ conda config --set show_channel_urls yes

使用conda

查看软件：conda list
搜索软件：conda search fastqc
安装软件：conda install fastqc -y
卸载：conda remove fastqc -y

查看conda环境
conda info --envs
创建新的环境：conda create -n genome python=3 fastqc trimmomatic -y
激活新的环境：conda activate genome
退出当前环境conda deactivate