1.PREREQUISITE

You need install Python >=3.6

You need install [ANNOVAR](http://annovar.openbioinformatics.org/en/latest/) version >= 2016-02-01.

Most of the datases can be downloaded automatically.

Some updated datasets(cosmic and icgc) for Annovar: https://cancervar.wglab.org/databases/ (download and gunzip, put in the Annovar db folder)

Please use the updated files, outdated files will bring some problems of running CancerVar.

2. install

   Using CONDA and manage the environment.

    conda create  -n opai python=3.6

    conda activate opai

    conda install -c anaconda numpy pandas scikit-learn

    conda install -c pytorch pytorch=1.9

参考：https://github.com/WGLab/Cancervar