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dekkerlab/cworld-dekker：Perl cworld 模块和 C 数据（3C、4C、5C、Hi-C）的实用程序/分析脚本集合 (github.com)

conda activate hic-pro (python 2.7)

依赖包
libgd (2.0.28 or higher)
bedtools (bedtools or bedtools2)
R / Rscript
Python 2 (numpy,scipy,matplotlib)

###命令
conda install -c anaconda libgd       #[Libgd :: Anaconda.org](https://anaconda.org/anaconda/libgd)
conda install -c bioconda perl-gd    #[Perl Gd :: Anaconda.org](https://anaconda.org/bioconda/perl-gd)
conda install r-base
conda install bedtools

###检查
python -V
which R
which bedtools

安装

#perl -MGD -e 'print $GD::VERSION ."\n";'
perl Build.PL
#Build installdeps
./Build
./Build install

perl software/cworld-dekker/scripts/perl/matrix2insulation.pl

报错1

Checking prerequisites...
  requires:
    !  GD is not installed

解决1

安装perl-gd    conda install -c bioconda perl-gd