对于同一份manifest，gdc-client时常也会出现报错下载失败，推测原因为网络/网速问题。春节在家，无法更换网络，故尝试在不同时间段进行下载，最后终于成功。另外，发现gdc-client支持断点下载。
$ ./gdc-client.exe download -m gdc_manifest_CESC_counts.2021-02-15.txt -d expdata
100% [###############################################################] Time: 0:00:07 0.1 B/s
100% [###############################################################] Time: 0:00:08 0.1 B/s
100% [###############################################################] Time: 0:00:08 0.1 B/s
N/A% [ ] ETA: --:--:-- 0.0 s/B E
RROR: HTTPSConnectionPool(host='api.gdc.cancer.gov', port=443): Max retries exceeded with url: /d
ata?tarfile (Caused by SSLError(SSLError("bad handshake: SysCallError(10060, 'WSAETIMEDOUT')")))
ERROR: An unexpected error has occurred during normal operation of the client. Please report the
following exception to GDC support support@nci-gdc.datacommons.io.
--- Logging error ---
Traceback (most recent call last):
File "gdc-client", line 111, in <module>
File "site-packages\gdc_client-1.5.0-py3.7.egg\gdc_client\download\parser.py", line 103, in dow
nload
File "site-packages\gdc_client-1.5.0-py3.7.egg\gdc_client\download\client.py", line 279, in dow
nload_small_groups
File "site-packages\gdc_client-1.5.0-py3.7.egg\gdc_client\download\client.py", line 218, in _do
wnload_tarfile
AttributeError: 'NoneType' object has no attribute 'status_code'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "tokenize.py", line 385, in find_cookie
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcf in position 0: invalid continuation byte
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "logging_init.py", line 1025, in emit
File "logging_init.py", line 869, in format
File "site-packages\gdc_client-1.5.0-py3.7.egg\gdc_client\log\log.py", line 42, in format
File "logging_init.py", line 616, in format
File "logging_init.py", line 566, in formatException
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 104, in prin
t_exception
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 508, in in
it
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 363, in extr
act
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 285, in line
File "c:\users\cdis\desktop\gdc-client\bin\venv\lib\linecache.py", line 16, in getline
File "c:\users\cdis\desktop\gdc-client\bin\venv\lib\linecache.py", line 47, in getlines
File "c:\users\cdis\desktop\gdc-client\bin\venv\lib\linecache.py", line 136, in updatecache
File "tokenize.py", line 449, in open
File "tokenize.py", line 426, in detect_encoding
File "tokenize.py", line 390, in find_cookie
SyntaxError: invalid or missing encoding declaration for 'gdc-client'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "tokenize.py", line 385, in find_cookie
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcf in position 0: invalid continuation byte
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "gdc-client", line 121, in <module>
File "logging_init.py", line 1413, in exception
File "logging_init.py", line 1407, in error
File "logging_init.py", line 1514, in log
File "logging_init.py", line 1524, in handle
File "logging_init.py", line 1586, in callHandlers
File "logging_init.py", line 894, in handle
File "logging_init.py", line 1033, in emit
File "logging_init_.py", line 947, in handleError
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 104, in prin
t_exception
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 521, in in
it
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 533, in _loa
d_lines
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 533, in _loa
d_lines
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 531, in _loa
d_lines
File "C:\Users\CDIS\AppData\Local\Programs\Python\Python37\Lib\traceback.py", line 285, in line
File "c:\users\cdis\desktop\gdc-client\bin\venv\lib\linecache.py", line 16, in getline
File "c:\users\cdis\desktop\gdc-client\bin\venv\lib\linecache.py", line 47, in getlines
File "c:\users\cdis\desktop\gdc-client\bin\venv\lib\linecache.py", line 136, in updatecache
File "tokenize.py", line 449, in open
File "tokenize.py", line 426, in detect_encoding
File "tokenize.py", line 390, in find_cookie
SyntaxError: invalid or missing encoding declaration for 'gdc-client'
[23512] Failed to execute script gdc-client
