目的:
1 hit with significant e-value in "JB864.raven_mask.query_wtf*-dw.withanno.out" doesn't have a positional information
希望知道这个hit的位置信息
hit in JB864.raven_mask.query_wtf4-dw
outer repeat in Utg37 align with other outerrepeat
分析步骤
step1. Utg37 annotation
snapgene file for Utg37
step2. online blast analysis1
query: Utig37:1-5176
subject: Schizosaccharomyces pombe (taxid:4896)
结果
Descriptions for Blast hits
hit 1-range 1: 446-5176 on query, II:458826-463561 on subject
hit 1-range 2: 218-429 on query,II:592887-592672(wtf2-down) on subject
hit1-range2
hit 2
hit2
step 3. online blast analysis 2:
query: Utig37:1-5176
subject:JB22_wts0403 interval
blast against JB22_wts0403 interval
结论:
这条序列属于wtf conserve down序列