使用Seurat安装hdf5r报错

安装hfd5r报错

configure: error: The version of hdf5 installed on your system is not sufficient. Please ensure that at least version 1.8.13 is installed
ERROR: configuration failed for package ‘hdf5r’

1. 下载hdf5-1.8.13的源码

wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.13/src/hdf5-1.8.13.tar.bz2

2. 编译安装

tar xjf hdf5-1.8.13.tar.bz2
cd hdf5-1.8.13
./configure --prefix=$HOME/.local/bin/hdf5-1.8.13
make && make install

3. 设置环境变量

export PATH=$HOME/.local/bin/hdf5-1.8.13/bin:$PATH
export LD_LIBRARY_PATH=$HOME/.local/bin/hdf5-1.8.13/lib:$LD_LIBRARY_PATH

4. 重新安装R包hdf5r

install.packages('hdf5r')