安装miniconda
bio04@VM-0-6-ubuntu:~$ cd biosoft
bio04@VM-0-6-ubuntu:~/biosoft$ wget https://mirrors.bfsu.edu.cn/anaconda/miniconda/Miniconda3-py39_22.11.1-1-Linux-x86_64.sh
--2022-12-28 21:54:15-- https://mirrors.bfsu.edu.cn/anaconda/miniconda/Miniconda3-py39_22.11.1-1-Linux-x86_64.sh
Resolving mirrors.bfsu.edu.cn (mirrors.bfsu.edu.cn)... 39.155.141.16, 2001:da8:20f:1003::fe55:2840
Connecting to mirrors.bfsu.edu.cn (mirrors.bfsu.edu.cn)|39.155.141.16|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 69903841 (67M) [application/octet-stream]
Saving to: ‘Miniconda3-py39_22.11.1-1-Linux-x86_64.sh’
Miniconda3-py39_22.11.1-1-Linux-x86_64.sh 100%[========================================================================================================>] 66.67M 12.1MB/s in 4.7s
2022-12-28 21:54:19 (14.2 MB/s) - ‘Miniconda3-py39_22.11.1-1-Linux-x86_64.sh’ saved [69903841/69903841]
bio04@VM-0-6-ubuntu:~/biosoft$ bash Miniconda3-py39_22.11.1-1-Linux-x86_64.sh
Welcome to Miniconda3 py39_22.11.1-1
激活conda
bio04@VM-0-6-ubuntu:~/biosoft$ source ~/.bashrc
使用中科大镜像
conda config --add channels https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda/
conda config --add channels https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge/
conda config --add channels https://mirrors.bfsu.edu.cn/anaconda/pkgs/free/
conda config --add channels https://mirrors.bfsu.edu.cn/anaconda/pkgs/main/
conda config --set show_channel_urls yes
查看已安装
(base) bio04@VM-0-6-ubuntu:~/biosoft$ conda list
# packages in environment at /home/bio04/miniconda3:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main defaults
_openmp_mutex 5.1 1_gnu defaults
brotlipy 0.7.0 py39h27cfd23_1003 defaults
ca-certificates 2022.10.11 h06a4308_0 defaults
安装软件
(base) bio04@VM-0-6-ubuntu:~/biosoft$ conda install fastqc -y
Collecting package metadata (current_repodata.json): done
Solving environment: done
删除软件
(base) bio04@VM-0-6-ubuntu:~/biosoft$ conda remove fastqc -y
Collecting package metadata (repodata.json): | Killed
conda环境创建
(base) bio04@VM-0-6-ubuntu:~/biosoft$ conda info --envs
# conda environments:
#
base * /home/bio04/miniconda3
(base) bio04@VM-0-6-ubuntu:~/biosoft$ conda create -n rna-seq python=3 fastqc trimmomatic -y
Collecting package metadata (current_repodata.json): done
Solving environment: done
激活conda环境
(base) bio04@VM-0-6-ubuntu:~/biosoft$ conda info --envs
# conda environments:
#
base * /home/bio04/miniconda3
rna-seq /home/bio04/miniconda3/envs/rna-seq
(base) bio04@VM-0-6-ubuntu:~/biosoft$ conda activate rna-seq
(rna-seq) bio04@VM-0-6-ubuntu:~/biosoft$ conda info --envs
# conda environments:
base /home/bio04/miniconda3
rna-seq * /home/bio04/miniconda3/envs/rna-seq
退出conda环境
(rna-seq) bio04@VM-0-6-ubuntu:~/biosoft$ conda deactivate
(base) bio04@VM-0-6-ubuntu:~/biosoft$
