多线程压缩工具pigz使用

参考多线程压缩工具Pigz使用

学习Linux系统时都会学习这么几个压缩工具：gzip、bzip2、zip、xz，以及相关的解压工具。关于这几个工具的使用和相互之间的压缩比以及压缩时间对比可以看：Linux中归档压缩工具学习

那么Pigz是什么呢？简单的说，就是支持并行压缩的gzip。Pigz默认用当前逻辑cpu个数来并发压缩，无法检测个数的话，则默认并发8个线程，也可以使用-p指定线程数。需要注意的是其CPU使用比较高。

官网：http://zlib.net/pigz

安装

yum install pigz

使用方法

$ pigz --help
Usage: pigz [options] [files ...]
  will compress files in place, adding the suffix '.gz'.  If no files are
  specified, stdin will be compressed to stdout.  pigz does what gzip does,
  but spreads the work over multiple processors and cores when compressing.
 
Options:
  -0 to -9, -11        Compression level (11 is much slower, a few % better)
  --fast, --best       Compression levels 1 and 9 respectively
  -b, --blocksize mmm  Set compression block size to mmmK (default 128K)
  -c, --stdout         Write all processed output to stdout (won't delete)
  -d, --decompress     Decompress the compressed input
  -f, --force          Force overwrite, compress .gz, links, and to terminal
  -F  --first          Do iterations first, before block split for -11
  -h, --help           Display a help screen and quit
  -i, --independent    Compress blocks independently for damage recovery
  -I, --iterations n   Number of iterations for -11 optimization
  -k, --keep           Do not delete original file after processing
  -K, --zip            Compress to PKWare zip (.zip) single entry format
  -l, --list           List the contents of the compressed input
  -L, --license        Display the pigz license and quit
  -M, --maxsplits n    Maximum number of split blocks for -11
  -n, --no-name        Do not store or restore file name in/from header
  -N, --name           Store/restore file name and mod time in/from header
  -O  --oneblock       Do not split into smaller blocks for -11
  -p, --processes n    Allow up to n compression threads (default is the
                       number of online processors, or 8 if unknown)
  -q, --quiet          Print no messages, even on error
  -r, --recursive      Process the contents of all subdirectories
  -R, --rsyncable      Input-determined block locations for rsync
  -S, --suffix .sss    Use suffix .sss instead of .gz (for compression)
  -t, --test           Test the integrity of the compressed input
  -T, --no-time        Do not store or restore mod time in/from header
  -v, --verbose        Provide more verbose output
  -V  --version        Show the version of pigz
  -z, --zlib           Compress to zlib (.zz) instead of gzip format
  --                   All arguments after "--" are treated as files

原目录大小：

[20:30 root@hulab /DataBase/Human/hg19]$ du -h
8.1G    ./refgenome
1.4G    ./encode_anno
4.2G    ./hg19_index/hg19
8.1G    ./hg19_index
18G .

接下来我们分别使用gzip以及不同线程数的pigz对h19_index目录进行压缩，比较其运行时间。

### 使用gzip进行压缩（单线程）
[20:30 root@hulab /DataBase/Human/hg19]$ time tar -czvf index.tar.gz hg19_index/
hg19_index/
hg19_index/hg19.tar.gz
hg19_index/hg19/
hg19_index/hg19/genome.8.ht2
hg19_index/hg19/genome.5.ht2
hg19_index/hg19/genome.7.ht2
hg19_index/hg19/genome.6.ht2
hg19_index/hg19/genome.4.ht2
hg19_index/hg19/make_hg19.sh
hg19_index/hg19/genome.3.ht2
hg19_index/hg19/genome.1.ht2
hg19_index/hg19/genome.2.ht2

real    5m28.824s
user    5m3.866s
sys 0m35.314s
### 使用4线程的pigz进行压缩
[20:36 root@hulab /DataBase/Human/hg19]$ ls
encode_anno  hg19_index  index.tar.gz  refgenome
[20:38 root@hulab /DataBase/Human/hg19]$ time tar -cvf - hg19_index/ | pigz -p 4 > index_p4.tat.gz 
hg19_index/
hg19_index/hg19.tar.gz
hg19_index/hg19/
hg19_index/hg19/genome.8.ht2
hg19_index/hg19/genome.5.ht2
hg19_index/hg19/genome.7.ht2
hg19_index/hg19/genome.6.ht2
hg19_index/hg19/genome.4.ht2
hg19_index/hg19/make_hg19.sh
hg19_index/hg19/genome.3.ht2
hg19_index/hg19/genome.1.ht2
hg19_index/hg19/genome.2.ht2

real    1m18.236s
user    5m22.578s
sys 0m35.933s
### 使用8线程的pigz进行压缩
[20:42 root@hulab /DataBase/Human/hg19]$ time tar -cvf - hg19_index/ | pigz -p 8 > index_p8.tar.gz 
hg19_index/
hg19_index/hg19.tar.gz
hg19_index/hg19/
hg19_index/hg19/genome.8.ht2
hg19_index/hg19/genome.5.ht2
hg19_index/hg19/genome.7.ht2
hg19_index/hg19/genome.6.ht2
hg19_index/hg19/genome.4.ht2
hg19_index/hg19/make_hg19.sh
hg19_index/hg19/genome.3.ht2
hg19_index/hg19/genome.1.ht2
hg19_index/hg19/genome.2.ht2

real    0m42.670s
user    5m48.527s
sys 0m28.240s
### 使用16线程的pigz进行压缩
[20:43 root@hulab /DataBase/Human/hg19]$ time tar -cvf - hg19_index/ | pigz -p 16 > index_p16.tar.gz 
hg19_index/
hg19_index/hg19.tar.gz
hg19_index/hg19/
hg19_index/hg19/genome.8.ht2
hg19_index/hg19/genome.5.ht2
hg19_index/hg19/genome.7.ht2
hg19_index/hg19/genome.6.ht2
hg19_index/hg19/genome.4.ht2
hg19_index/hg19/make_hg19.sh
hg19_index/hg19/genome.3.ht2
hg19_index/hg19/genome.1.ht2
hg19_index/hg19/genome.2.ht2

real    0m23.643s
user    6m24.054s
sys 0m24.923s
### 使用32线程的pigz进行压缩
[20:43 root@hulab /DataBase/Human/hg19]$ time tar -cvf - hg19_index/ | pigz -p 32 > index_p32.tar.gz 
hg19_index/
hg19_index/hg19.tar.gz
hg19_index/hg19/
hg19_index/hg19/genome.8.ht2
hg19_index/hg19/genome.5.ht2
hg19_index/hg19/genome.7.ht2
hg19_index/hg19/genome.6.ht2
hg19_index/hg19/genome.4.ht2
hg19_index/hg19/make_hg19.sh
hg19_index/hg19/genome.3.ht2
hg19_index/hg19/genome.1.ht2
hg19_index/hg19/genome.2.ht2

real    0m17.523s
user    7m27.479s
sys 0m29.283s

### 解压文件
[21:00 root@hulab /DataBase/Human/hg19]$ time pigz -p 8 -d index_p8.tar.gz 

real    0m27.717s
user    0m30.070s
sys 0m22.515s

各个压缩时间的比较：

从上面可以看出，使用多线程pigz进行压缩能进行大大的缩短压缩时间，特别是从单线程的gzip到4线程的pigz压缩时间缩短了4倍，继续加多线程数，压缩时间减少逐渐不那么明显。
虽然pigz能大幅度的缩短运行时间，但这是以牺牲cpu为代价的，所以对于cpu使用较高的场景不太宜使用较高的线程数，一般而言使用4线程或8线程较为合适。