请务必设置verbose = T
不然干等着也不知道是在跑还是卡住了真的很难受
显示如下
Scanning file to determine attributes.
File attributes:
meta lines: 507
header_line: 508
variant count: 12834673
column count: 67
Meta line 507 read in.
All meta lines processed.
gt matrix initialized.
Character matrix gt created.
Character matrix gt rows: 12834673
Character matrix gt cols: 67
skip: 0
nrows: 12834673
row_num: 0
Processed variant: 12834673
All variants processed
Warning message:
In check_keys(vcf) :
The following INFO key occurred more than once: ##GATKCommandLine=<ID=ApplyVQSR
