部署Linux运算环境
安装Anaconda
Anaconda是Python和R编程语言的开源包管理器、环境管理器和发行版。它通常用于数据科学、机器学习、大规模数据处理、科学计算和预测分析。
国内镜像地址（国外连接下载慢，选择使用国内镜像下载）：
https://mirrors.tuna.tsinghua.edu.cn/anaconda/archive/
sudo wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/archive/Anaconda3-2023.07-2-Linux-x86_64.sh
bash Anaconda3-2023.07-2-Linux-x86_64.sh #安装
参考：
配置Anaconda源
解决Anaconda报The channel is not accessible源通道不可用问题
安装Anaconda源的包
https://anaconda.org/bioconda/bowtie2
https://anaconda.org/bioconda/getorganelle
#conda install
#To install this package run one of the following:
conda install -c bioconda getorganelle
安装GetOrganelle组装软件
零基础教程 | 叶绿体基因组组装 - GetOrganelle
conda create -n getorganelle #创建环境
conda activate getorganelle #激活环境
conda install -c bioconda getorganelle
get_organelle_config.py --add embplant_pt,embplant_mt
wget https://github.com/Kinggerm/GetOrganelleGallery/raw/master/Test/reads/Arabidopsis_simulated.1.fq.gz
wget https://github.com/Kinggerm/GetOrganelleGallery/raw/master/Test/reads/Arabidopsis_simulated.2.fq.gz
md5sum Arabidopsis_simulated.*.fq.gz
#then verify the integrity of downloaded files using md5sum:
get_organelle_from_reads.py -1 Arabidopsis_simulated.1.fq.gz -2 Arabidopsis_simulated.2.fq.gz -t 1 -o Arabidopsis_simulated.plastome -F embplant_pt -R 10
wget https://github.com/Kinggerm/GetOrganelleGallery/blob/master/Test/reads/SRR5602600_1.fastq.gz
wget https://github.com/Kinggerm/GetOrganelleGallery/blob/master/Test/reads/SRR5602600_2.fastq.gz
查看Linux系统负荷情况
Ubuntu 查看系统资源占用(CPU、内存、网络)_ubuntu查看cpu占用率-CSDN博客
系统监视器（CPU、内存、网络图）
gnome-system-monitor
