1：2019:Whole Genome Sequencing and Comparative Genomics Analyses of Pandoraea sp. XY-2, a New Species Capable of Biodegrade Tetracycline
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2:SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets
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3.2019Comparative analysis of whole-genome sequencing pipelines to minimize false negative findings
4:2009Comparative genomic workflow
5:2016A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies
6:Roary: the Pan Genome Pipeline 很详细
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7:microbial Comparative Genomics: An Overview of Tools and Insights Into The Genus Corynebacterium
