1.
-dbtype <String, nucl',prot'>
Molecule type of target db
-parse_seqids
Option to parse seqid for FASTA input if set, for all other input types
seqids are parsed automatically
2.
# Build the blast index.
makeblastdb -in index/all-proteins.fa -dbtype prot -out index/all -parse_seqids
# Run the blast queries.
blastp -db index/all -query L.fa
# Customize the output even more.
blastp -db index/all -query L.fa -outfmt "7 qseqid sseqid pident"
# Three best alignments
blastp -db index/all -query L.fa -outfmt "6 qseqid sseqid pident" | sort -k3 -rn | head -5
# The worst alignments.
blastp -db index/all -query L.fa -outfmt "6 qseqid sseqid pident" | sort -k3 -rn | tail -5
outfmt 6为m8格式。
3.
fasta之外是makedb的输出。
db
