library(vctrs)
library("vctrs")
library("ReactomePA")
Registered S3 method overwritten by 'enrichplot':
method from
fortify.enrichResult DOSE
ReactomePA v1.30.0 For help: https://guangchuangyu.github.io/ReactomePA
If you use ReactomePA in published research, please cite:
Guangchuang Yu, Qing-Yu He. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems 2016, 12(2):477-479
Warning messages:
1: ‘splitAsList’存在多个方法表
2: replacing previous import ‘S4Vectors::splitAsList’ by ‘IRanges::splitAsList’ when loading ‘AnnotationDbi’
library("slingshot")
载入需要的程辑包:princurve
Warning messages:
1: 程辑包‘princurve’是用R版本3.6.2 来建造的
2: replacing previous import ‘S4Vectors::splitAsList’ by ‘IRanges::splitAsList’ when loading ‘SummarizedExperiment’
3: replacing previous import ‘S4Vectors::splitAsList’ by ‘IRanges::splitAsList’ when loading ‘GenomeInfoDb’
4: replacing previous import ‘S4Vectors::splitAsList’ by ‘IRanges::splitAsList’ when loading ‘GenomicRanges’
5: replacing previous import ‘S4Vectors::splitAsList’ by ‘IRanges::splitAsList’ when loading ‘XVector’
6: replacing previous import ‘S4Vectors::splitAsList’ by ‘IRanges::splitAsList’ when loading ‘DelayedArray’
7: ‘type’存在多个方法表
8: ‘splitAsList’存在多个方法表
9: replacing previous import ‘BiocGenerics::type’ by ‘DelayedArray::type’ when loading ‘SummarizedExperiment’
library("jackstraw")
Error: package or namespace load failed for ‘jackstraw’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
不存在叫‘lfa’这个名字的程辑包
In addition: Warning message:
程辑包‘jackstraw’是用R版本3.6.2 来建造的
library("clusterProfiler")
clusterProfiler v3.14.3 For help: https://guangchuangyu.github.io/software/clusterProfiler
If you use clusterProfiler in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.
Warning message:
程辑包‘clusterProfiler’是用R版本3.6.2 来建造的
library("GOSemSim")
GOSemSim v2.12.0 For help: https://guangchuangyu.github.io/GOSemSim
If you use GOSemSim in published research, please cite:
Guangchuang Yu, Fei Li, Yide Qin, Xiaochen Bo, Yibo Wu, Shengqi Wang. GOSemSim: an R package for measuring semantic similarity among GO terms and gene products Bioinformatics 2010, 26(7):976-978