一、mobaxterm镜像选择未弹出
chooseCRANmirror(graphics=F)
二、安装stringr包失败
之前在本机的Rstudio安装stringr的时候好像没有出现什么问题
今天试着在实验室的服务器上安装stringr包，但是一直安装不了……
实验室服务器系统是Ubuntu20，R版本4.1
- 首先是安装stringr包报错
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/data/kesimin/anaconda3/envs/r4.1/lib/R/library/stringr’
Warning message:
In install.packages(packageurl, repos = NULL, type = "source") :
installation of package ‘/tmp/RtmpmfpXSV/downloaded_packages/stringr_1.4.0.tar.gz’ had non-zero exit status
- dependency stringi继续报错
trying URL 'https://cran.r-project.org/src/contrib/stringi_1.7.4.tar.gz'
Content type 'application/x-gzip' length 7599762 bytes (7.2 MB)
==================================================
downloaded 7.2 MB
* installing *source* package ‘stringi’ ...
** package ‘stringi’ successfully unpacked and MD5 sums checked
** using staged installation
checking for R_HOME... /data/kesimin/anaconda3/envs/r4.1/lib/R
checking for R... /data/kesimin/anaconda3/envs/r4.1/lib/R/bin/R
checking for endianness... little
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /bin/cat
checking for local ICUDT_DIR... icu69/data
checking for x86_64-conda-linux-gnu-gcc... x86_64-conda-linux-gnu-cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-conda-linux-gnu-cc accepts -g... yes
checking for x86_64-conda-linux-gnu-cc option to accept ISO C89... none needed
checking how to run the C preprocessor... /data/kesimin/anaconda3/envs/r4.1/bin/x86_64-conda-linux-gnu-cpp
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-conda-linux-gnu-c++ -std=gnu++11 accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... 66.1
checking for ICU4C >= 55... yes
checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done
checking whether an ICU4C-based project can be built... no
*** This version of ICU4C cannot be used.
*** Using the ICU 69 bundle.
checking whether we may compile src/icu69/common/putil.cpp... yes
checking whether we may compile src/icu69/i18n/number_affixutils.cpp... yes
checking whether alignof(std::max_align_t) is available... yes
checking whether the ICU data library can be downloaded... downloading the ICU data library (icudt)
output path: icu69/data/icu4c-69_1-data-bin-l.zip
trying URL 'https://raw.githubusercontent.com/gagolews/stringi/master/src/icu69/data/icu4c-69_1-data-bin-l.zip'
Error in download.file(paste(href, fname, sep = ""), icudtzipfname, mode = "wb"): cannot open URL 'https://raw.githubusercontent.com/gagolews/stringi/master/src/icu69/data/icu4c-69_1-data-bin-l.zip'
trying URL 'http://raw.githubusercontent.com/gagolews/stringi/master/src/icu69/data/icu4c-69_1-data-bin-l.zip'
Error in download.file(paste(href, fname, sep = ""), icudtzipfname, mode = "wb"): cannot open URL 'http://raw.githubusercontent.com/gagolews/stringi/master/src/icu69/data/icu4c-69_1-data-bin-l.zip'
icudt download failed
Error: Stopping on error
In addition: Warning messages:
1: In download.file(paste(href, fname, sep = ""), icudtzipfname, mode = "wb") :
URL 'https://raw.githubusercontent.com/gagolews/stringi/master/src/icu69/data/icu4c-69_1-data-bin-l.zip': status was 'Couldn't connect to server'
2: In download.file(paste(href, fname, sep = ""), icudtzipfname, mode = "wb") :
URL 'http://raw.githubusercontent.com/gagolews/stringi/master/src/icu69/data/icu4c-69_1-data-bin-l.zip': status was 'Unsupported protocol'
Execution halted
*** *********************************************************************
*** stringi cannot be built.
*** Failed to download the ICU data library (icudt). Stopping now.
*** For build environments that have no internet access,
*** see the INSTALL file for a workaround.
*** *********************************************************************
ERROR: configuration failed for package ‘stringi’
* removing ‘/data/kesimin/anaconda3/envs/r4.1/lib/R/library/stringi’
Warning message:
In install.packages(packageurl2, repos = NULL, type = "source") :
installation of package ‘/tmp/RtmpmfpXSV/downloaded_packages/stringi_1.7.4.tar.gz’ had non-zero exit status
3.用conda安装！
先创建一个新的环境。。原来的环境感觉是R已经没办法正常用了。。
conda create --name r4.0
conda install r-base
conda install r-stringr
害。。Linux真的太复杂了。。
