安装conda
18.04 source
中科大
deb https://mirrors.ustc.edu.cn/ubuntu/ bionic main restricted universe multiverse
deb-src https://mirrors.ustc.edu.cn/ubuntu/ bionic main restricted universe multiverse
deb https://mirrors.ustc.edu.cn/ubuntu/ bionic-security main restricted universe multiverse
deb-src https://mirrors.ustc.edu.cn/ubuntu/ bionic-security main restricted universe multiverse
deb https://mirrors.ustc.edu.cn/ubuntu/ bionic-updates main restricted universe multiverse
deb-src https://mirrors.ustc.edu.cn/ubuntu/ bionic-updates main restricted universe multiverse
deb https://mirrors.ustc.edu.cn/ubuntu/ bionic-backports main restricted universe multiverse
deb-src https://mirrors.ustc.edu.cn/ubuntu/ bionic-backports main restricted universe multiverse
## Not recommended
# deb https://mirrors.ustc.edu.cn/ubuntu/ bionic-proposed main restricted universe multiverse
# deb-src https://mirrors.ustc.edu.cn/ubuntu/ bionic-proposed main restricted universe multiverse
apt-get install vim openssh-server
apt-get -y install build-essential zsh
apt install -y bedtools
apt install -y zlib1g-dev
sudo apt-get install -y wget gawk gc
c g++ make cmake automake curl unzip zip bzip2 gfortran tar gzip pigz parallel build-essential libncurses5-dev
libc6-dev zlib1g zlib1g-dev libtbb-dev libtbb2 python python-dev python-numpy python-biopython python-xlrd pytho
n-openpyxl default-jdk
apt-get install -y build-essential
apt-get install -y cmake docker.io docker tree
apt-get install -y libxml2-dev libbz2-dev
apt-get install -y iputils-ping net-tools
apt install -y libcurl4-openssl-dev openssl libssl-dev
apt install -y libdb5.3-dev
apt-get install -y fort77 xorg-dev liblzma-dev libblas-dev gfortran
apt-get install -y gcc-multilib gobjc++
apt install -y texlive texlive-fonts-extra
apt-get install -y software-properties-common
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
gpg -a --export E084DAB9 | sudo apt-key add -
add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/'
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
# add-apt-repository 'deb ht/CRAN/bin/linux/ubuntu/ bionic-cran35/'
apt-get update
apt-get install -y r-base r-base-dev
sudo apt install -y libatlas-base-dev
apt install -y nfs-common nfs-kernel-server screen
apt-get clean all
Perl
cpan -i DB_File
cpan -i URI::Escape
cpan -i Set::IntervalTree
cpan -i Carp::Assert
cpan -i JSON::XS
cpan -i PerlIO::gzip
nfs https://www.howtoing.com/how-to-set-up-an-nfs-mount-on-ubuntu-18-04
一些软件
git clone https://github.com/CRG-Barcelona/libbeato.git
git clone https://github.com/CRG-Barcelona/bwtool.git
cd libbeato/
./configure
make
sudo make install
cd ../bwtool/
./configure
make
sudo make install
http://www.omgubuntu.co.uk/2016/04/10-things-to-do-after-installing-ubuntu-16-04-lts
java http://ubuntuhandbook.org/index.php/2018/11/how-to-install-oracle-java-11-in-ubuntu-18-04-18-10/
java
sudo add-apt-repository ppa:webupd8team/java
sudo apt install openjdk-8-jdk openjdk-8-jre
sudo update-alternatives –config java
