网址:NHANES Questionnaires, Datasets, and Related Documentation (cdc.gov)
代码总结
#R语言下载所需包
install.packages("nhanesA")
install.packages("knitr")
install.packages("tidyverse")
install.packages("plyr")
library(nhanesA)
library(knitr)
library(tidyverse)
library(plyr)
# 查询指定年份和指定分类中的表格
nhanesTables(data_group = 'DEMO', year = 2013)
#查找表格中包含的字段
kable(nhanesTableVars(data_group = 'DEMO', nh_table = 'DEMO_H', namesonly = FALSE))
#下载人口统计学数据
#方法一:直接用代码下载
demo <- nhanes('DEMO_H')
#方法二:官网下载到本地后,用R打开
library(haven)
demo <- read_xpt(file ='DEMO_H.xpt')
#选择相应变量下载完成后,我们根据研究目的选择变量
demo1 <- demo %>% select(SEQN, # 序列号
RIAGENDR, # 性别
RIDAGEYR, # 年龄
RIDRETH3, # 种族
DMDMARTL, # 婚姻状况
WTINT2YR,WTMEC2YR, # 权重
SDMVPSU, # psu
SDMVSTRA) # strata
#翻译分类变量
demo_vars <- names(demo1)
demo2 <- nhanesTranslate('DEMO_H', demo_vars, data=demo1)
#连表
# 方式1:逐张连表
data <- demo2 %>% full_join(bpx1, by = 'SEQN') %>% full_join(alq1, by = 'SEQN')
# 方式2:全部连表
data <- join_all(list(demo2, bpx1, alq1, smq1), by = 'SEQN', type = 'full')
总体情况
美国国家健康与营养调查( NHANES, National Health and Nutrition Examination Survey)是一项基于人群的横断面调查,旨在收集有关美国家庭人口健康和营养的信息。项目每年调查一个全国代表性的样本,约5000人,这些人群位于全国各县。主要包含1999-2022年数据,并且持续更新中。
1. NHANES Demographics Data(DEMO)
可查看人口学相关的表格名称并进行下载。
变量:主要包含性别、年龄、种族/族裔、教育、婚姻状况、国籍、怀孕状况、家庭和家庭总收入以及经济状况等
2. NHANES Dietary Data (DIET)
2.1.1Dietary Interview- Individual Foods(DRXIFF/DR1IFF/DR2IFF)
1999-2002只有1次记录,2003年以后有First Day和Second Day
2.1.2 Dietary Interview-Total Nutrient Intakes (DRXTOT/DR1TOT/DR2TOT)
2.2.1 Dietary Interview Technical Support File - Food Codes(DRXFCD)
2.2.2 Dietary Interview Technical Support File - Modification Codes(DRXMCD)
2.3.1 Dietary Supplement Use 24-Hour - Individual Dietary (DS1/2IDS)
2.3.2Dietary Supplement Use 24-Hour - Total Dietary Supplements(DS1/2TOT)
2.4.1 Dietary Supplement Use 30 Day - Individual Dietary Supplements
2.4.2 Dietary Supplement Use 30-Day - Total Dietary Supplements
2.4.3 Dietary Supplement Use 30-Day - File 1/2, Supplement Counts
2.5.1 Food Frequency Questionnaire(2003-2006)
3.NHANES Examination Data(EXAM)
Arthritis Body Measures(关节炎)
Audiometry(听力测量)
Balance(平衡)
Bioelectrical Impedance Analysis(生物电阻抗分析)
Blood Pressure(血压BPX)
Body Measures(身体测量BMX)
Cardiovascular Fitness(心血管健康CVX)
Dermatology(皮肤病)
Dual Energy X-ray Absorptiometry (DEXA测量DXX..)
Exhaled Nitric Oxide(呼出NO)
Fluorosis - Clinical(氟斑牙)
Liver Ultrasound Transient Elastography(肝超声弹性成像LUX)
Lower Extremity Disease(下肢疾病)
Muscle Strength(肌力MSX)
Ophthalmology(眼科)
Oral Health(口腔健康)
Physical Activity Monitor(身体活动监测PAX..)
Spirometry(肺活量)
Taste & Smell
Tuberculosis(结核)
Vision(视野)
4. NHANES Laboratory Data(LAB)
(仅选取部分)
Albumin & Creatinine - Urine
Cholesterol - HDL
Cholesterol - High - Density Lipoprotein (HDL)
Cholesterol - LDL & Triglycerides
Cholesterol - LDL, Triglyceride & Apoliprotein (ApoB)
Cholesterol - Low-Density Lipoproteins (LDL) & Triglycerides
Cholesterol - Total
Cholesterol - Total & HDL
C-Reactive Protein (CRP)
Electrolytes - 24-Hour Urine - First Collection(电解质)
Fasting Questionnaire
Glycohemoglobin
Glycohemoglobin, Plasma Glucose, Serum C-peptide, & Insulin, Second Exam
Insulin
Oral Glucose Tolerance Test
Plasma Fasting Glucose & Insulin
Sex Steroid Hormone - Serum
Sodium, Potassium & Chloride - Casual Urine
Thyroid - Stimulating Hormone & Thyroxine (TSH & T4)、Total Testosterone
感染(肝炎、HPV、HIV、寄生虫、细菌、真菌)、过敏、重金属/微量元素/农药/毒品(?)、肿瘤标志物、维生素、孕检
5.NHANES Questionnaire Data(Q)
Acculturation(适应性)
Air Quality(空气质量)
Alcohol Use
Allergy(过敏)
Analgesic Pain Relievers(镇痛药物)
Arthritis(关节炎)
Audiometry(听力)
Balance
Blood Pressure & Cholesterol
Bowel Health
Cardiovascular Health
Cognitive Functioning
Consumer Behavior
Creatine Kinase
Current Health Status
Dermatology(皮肤病)
Diabetes
Diet Behavior & Nutrition
Disability
Drug Use
Early Childhood
Food Security
Functioning - Adult
Health Insurance
Hepatitis
Hospital Utilization & Access to Care
Housing Characteristics
Immunization
Income
Kidney Conditions
Medical Conditions
Mental Health
Miscellaneous Pain
Occupation
Occupation
Osteoporosis
Pesticide Use(杀虫剂)
Physical Activity
Physical Functioning
Prescription Medications(处方药)
Preventive Aspirin Use
**Reproductive Health **
Respiratory Health
Sexual Behavior
Sleep Disorders
Smoking
Social Support
Standing Balance
Taste & Smell
Vision
Volatile Toxicant(挥发性毒物)
Weight History
注:部分数据为付费数据,下一步了解人口学数据及其权重,饮食各问卷含义,检查和化验的可用数据,初步确定需要变量。