学习小组Day3笔记—applebear

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作者： applebear0507 邮箱： bethune0507@163.com

1.conda miniconda anaconda的关系

[图片上传中...(image-b201f7-1617199266920-0)]

2.找最新的Miniconda3-latest-Linux-x86_64.sh

<pre spellcheck="false" class="md-fences md-end-block md-fences-with-lineno ty-contain-cm modeLoaded" lang="" cid="n31" mdtype="fences" style="box-sizing: border-box; overflow: visible; font-family: Consolas, "Liberation Mono", Courier, monospace; font-size: 0.9em; display: block; break-inside: avoid; text-align: left; white-space: normal; background-image: inherit; background-position: inherit; background-size: inherit; background-repeat: inherit; background-attachment: inherit; background-origin: inherit; background-clip: inherit; background-color: rgb(248, 248, 248); position: relative !important; border: 1px solid rgb(221, 221, 221); color: rgb(160, 75, 1); border-radius: 3px; padding: 8px 1em 6px 0px; margin-bottom: 15px; margin-top: 15px; width: inherit; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; orphans: 2; text-indent: 0px; text-transform: none; widows: 2; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration-style: initial; text-decoration-color: initial;"> cd ~/biosoft
wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
source ~/.bashrc

使用清华镜像

conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
conda config --set show_channel_urls yes
conda list
conda search fastqc
conda install fastqc=0.11.7 -y
conda remove fastqc -y

conda 环境

conda info --envs
conda create -n rna-seq python=3 fastqc trimmomatic -y
conda info --envs
conda activate rna-seq
conda deactivate </pre>